There’s something truly magical about biting into a moist, spiced pumpkin muffin with a swirl of creamy cheesecake and a crunchy streusel topping. This Pumpkin Cheesecake Muffins with Streusel Topping Recipe blends seasonal flavors with a comforting texture that’s perfect for breakfast, snacks, or a festive treat anytime.
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Why You'll Love This Recipe
From the first time I made this recipe, I was hooked. The way the cream cheese filling melts just right inside the tender pumpkin muffin, topped with a crunchy, buttery pecan streusel—it feels like a little celebration in every bite. You don’t need to be a pro baker to get beautiful, bakery-quality results.
- Showstopper flavor combo: The pumpkin spices, creamy cheesecake, and pecan streusel make these muffins unforgettable.
- Perfectly moist texture: These muffins aren’t dry at all—they stay tender for days (if they last that long!).
- User-friendly steps: The recipe breaks down into simple parts that come together easily, even if you’re a beginner.
- Versatile for occasions: Great for fall gatherings, brunches, or as an anytime cozy snack.
Ingredients & Why They Work
Each ingredient plays a key role in balancing flavor and texture for these Pumpkin Cheesecake Muffins with Streusel Topping Recipe. A few secrets: full-fat cream cheese gives you that rich filling, and using a high-quality pumpkin puree like Libby's ensures just the right moisture and flavor balance.
- Cream Cheese: Using block cream cheese softened at room temperature means a smooth, luscious filling that bakes perfectly without curdling.
- Powdered Sugar: Blending this into the cream cheese creates a silky texture and subtle sweetness for that cheesecake layer.
- Raw Pecans: They add wonderful crunch and a deep nuttiness to the streusel, elevating every bite.
- Flour: All-purpose flour provides structure, but measuring accurately makes all the difference—too much flour makes these muffins dense, so fluff and spoon your flour for the best result.
- Pumpkin Puree: Libby’s pure pumpkin puree is my go-to for consistent flavor and no excess moisture, which keeps the muffins light and fluffy.
- Spices (Cinnamon, Cloves, Nutmeg, Ginger): The classic pumpkin spice blend is essential; fresh spices always make a difference if you can.
- Butter (Cold): Cold, cubed butter in the streusel creates those coveted crumbly bits when baked.
- Eggs & Vegetable Oil: Eggs provide lift while oil keeps the crumb tender and moist.
Make It Your Way
I’ve experimented with tweaks over time, but I find the original recipe perfect as is. Still, I love that you can easily customize it depending on your taste or what you have on hand.
- Dairy-Free Variation: I once made these with a vegan cream cheese substitute and coconut oil instead of butter in the streusel—it worked well, though the texture was slightly different, and I recommend chilling the cream cheese mixture longer.
- Gluten-Free Option: Using a 1-to-1 gluten-free flour blend works nicely, but let the batter rest for 5 minutes before baking to hydrate the flour properly.
- Extra Spice Kick: Sometimes I add a pinch of ground cardamom or extra ginger for a bolder pumpkin spice profile.
- Nut Alternatives: If pecans aren’t your thing, chopped walnuts or even almonds add a lovely crunch to the streusel topping.
Step-by-Step: How I Make Pumpkin Cheesecake Muffins with Streusel Topping Recipe
Step 1: Whip up the Cream Cheese Filling
Start by beating the softened cream cheese with powdered sugar and vanilla until ultra smooth. I like using a handheld mixer here to save my arms from a workout, but a vigorous whisk does the trick too! Pop this mixture into the freezer to firm up while you prep the rest. Don't freeze it solid—aim for a stiff yet scoopable texture; it bakes into a creamy, melty center that’s just perfect.
Step 2: Make the Streusel Topping
I pulse the pecans first in my food processor until coarsely chopped, then add the flour, sugars, and cinnamon. Once combined, I sprinkle the cold cubed butter and pulse until the mixture resembles small pebbles. If you catch any butter lumps, rub them gently between your fingers right in the mixture. If you don’t have a food processor, no worries—just cut the butter in by hand with a pastry cutter or two knives.
Step 3: Prepare Your Muffin Pans
Preheat your oven to 350°F. Line two muffin tins with 22 liners and lightly spray them with nonstick spray. This step ensures your muffins release easily without sticking or tearing.
Step 4: Mix Wet and Dry Ingredients Separately
In a large bowl, whisk the eggs gently, then stir in the sugar, pumpkin puree, and oil until combined. In another bowl, whisk together the flour, baking powder, baking soda, salt, and your pumpkin spice blend. Keeping wet and dry separate before combining helps keep the texture tender and light.
Step 5: Combine the Batter
Gently fold the flour mixture into the pumpkin mixture just until combined. The batter will be thick and spiced. Don’t overmix here—you want tender muffins, not dense ones.
Step 6: Assemble Your Muffins
Scoop about 1 ½ tablespoons of pumpkin batter into each muffin cup, spreading it evenly to cover the bottom. Add a heaping tablespoon of the cream cheese filling on top of the batter, then carefully spoon the rest of the pumpkin batter over to cover it. Finally, pile a heaping tablespoon of the chilled streusel topping over each one and gently press it in so it stays put while baking.
Step 7: Bake to Perfection
Bake the muffins for 20-22 minutes at 350°F, but watch closely—the baking time depends on how chilled your cream cheese filling is. The softer it is, the longer you'll need. Test doneness with a toothpick inserted into the cake part (not the cream cheese center), and when it comes out clean, they're ready! Let them cool in the pan for 5 minutes, then transfer to a wire rack.
Step 8: Add Final Touches and Serve
Sprinkle the tops with a little raw turbinado sugar and ground cinnamon for that finishing sparkle and extra flavor. These muffins are fantastic warm, but just as good at room temperature. And if you want to enjoy one later, a few seconds in the microwave works wonders to revive that soft, fresh-baked feel.
Top Tip
From my experience, nailing the texture of the cream cheese filling and measuring the flour right are the biggest keys to success with this Pumpkin Cheesecake Muffins with Streusel Topping Recipe. These tips will save you from common pitfalls and ensure your muffins shine.
- Right Cream Cheese Consistency: Make sure the cream cheese filling is firm but scoopable before assembling; too soft and you’ll have a gooey mishmash, too hard and it won’t melt nicely.
- Measure Flour Carefully: Fluff and spoon the flour into your cup rather than scooping directly to avoid dense muffins from too much flour.
- Chill Your Toppings: Freezing the cream cheese filling and streusel topping before baking helps keep the layers distinct and prevents sogginess.
- Check Doneness Smartly: Insert your toothpick into the cake portion only, avoiding the cream cheese center to get an accurate sense of when the muffins are done.
How to Serve Pumpkin Cheesecake Muffins with Streusel Topping Recipe
Garnishes
I love a simple dusting of ground cinnamon and a sprinkle of coarse turbinado sugar on top—it gives an inviting sparkle and compliments the spiced flavor beautifully. Sometimes, I toss on a few extra pecan halves just to boost the nutty crunch.
Side Dishes
These muffins pair wonderfully with a steaming cup of coffee or a chai latte. For brunch, I often serve them alongside scrambled eggs or a fresh fruit salad to balance the sweetness.
Creative Ways to Present
For holiday gatherings, I like to arrange these muffins on tiered stands with autumn leaves as decoration. They also make lovely edible gifts when wrapped individually in parchment paper tied with twine—a sweet, thoughtful surprise!
Make Ahead and Storage
Storing Leftovers
Once cooled, store leftover muffins in an airtight container in the fridge—if you stack them, place parchment paper between layers to keep the streusel topping intact. They’ll stay fresh for 3-5 days, and I always let them warm up a bit before eating to bring back that fresh-baked softness.
Freezing
I freeze these muffins individually wrapped in plastic wrap and then in a freezer bag. When you want one, just thaw at room temperature or heat lightly in the microwave. They thaw beautifully without losing their texture or flavor.
Reheating
A quick zap in the microwave for 10-15 seconds or warming in a low oven (around 300°F) for 5 minutes refreshes the muffins perfectly, reviving that creamy cheesecake inside and crispy streusel on top.


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